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2011 TotalLab Publications

Anfossi, M., Vuono, R., Maletta, R., Virdee, K., Mirabelli, M., Colao, R., Puccio, G., Bernardi, L., Frangipane, F., Gallo, M., et al. (2011). Compound heterozygosity of 2 novel MAPT mutations in frontotemporal dementia. Neurobiol Aging 32, 757 e751-757 e711.


Arefian, E., Kiani, J., Soleimani, M., Shariati, S. A., Aghaee-Bakhtiari, S. H., Atashi, A., Gheisari, Y., Ahmadbeigi, N., Banaei-Moghaddam, A. M., Naderi, M., et al. (2011). Analysis of microRNA signatures using size-coded ligation-mediated PCR. Nucleic Acids Res 39, e80.


Beno, I., Rosenthal, K., Levitine, M., Shaulov, L., and Haran, T. E. (2011). Sequence-dependent cooperative binding of p53 to DNA targets and its relationship to the structural properties of the DNA targets. Nucleic Acids Res 39, 1919-1932.


Bharadwaj, A. G., Goodrich, N. P., McAtee, C. O., Haferbier, K., Oakley, G. G., Wahl, J. K., 3rd, and Simpson, M. A. (2011). Hyaluronan suppresses prostate tumor cell proliferation through diminished expression of N-cadherin and aberrant growth factor receptor signaling. Exp Cell Res 317, 1214-1225.


Blazkova, M., Javurkova, B., Fukal, L., and Rauch, P. (2011). Immunochromatographic strip test for detection of genus Cronobacter. Biosens Bioelectron 26, 2828-2834.


Bogojevic, D., Poznanovic, G., Grdovic, N., Grigorov, I., Vidakovic, M., Dinic, S., and Mihailovic, M. (2011). Administration of rat acute-phase protein alpha(2)-macroglobulin before total-body irradiation initiates cytoprotective mechanisms in the liver. Radiat Environ Biophys 50, 167-179.


Byzova, N. A., Zvereva, E. A., Zherdev, A. V., Eremin, S. A., Sveshnikov, P. G., and Dzantiev, B. B. (2011). Pretreatment-free immunochromatographic assay for the detection of streptomycin and its application to the control of milk and dairy products. Anal Chim Acta 701, 209-217.


Cai, Z., Sanchez, A., Shi, Z., Zhang, T., Liu, M., and Zhang, D. (2011). Activation of Toll-like receptor 5 on breast cancer cells by flagellin suppresses cell proliferation and tumor growth. Cancer Res 71, 2466-2475.


Chan, C. H., Garrity, J., Crosby, H. A., and Escalante-Semerena, J. C. (2011). In Salmonella enterica, the sirtuin-dependent protein acylation/deacylation system (SDPADS) maintains energy homeostasis during growth on low concentrations of acetate. Mol Microbiol 80, 168-183.


Cheon, S., Lee, J. H., Park, S., Bang, S. I., Lee, W. J., Yoon, D. Y., Yoon, S. S., Kim, T., Min, H., Cho, B. J., et al. (2011). Overexpression of IL-32alpha increases natural killer cell-mediated killing through up-regulation of Fas and UL16-binding protein 2 (ULBP2) expression in human chronic myeloid leukemia cells. J Biol Chem 286, 12049-12055.


Coolen, M. J., van de Giessen, J., Zhu, E. Y., and Wuchter, C. (2011). Bioavailability of soil organic matter and microbial community dynamics upon permafrost thaw. Environ Microbiol.


Cortes, R., Rosello-Lleti, E., Rivera, M., Martinez-Dolz, L., Salvador, A., Sirera, R., and Portoles, M. (2011). Expression of B-type natriuretic peptide forms in ischemic human hearts. Int J Cardiol.


D'Angelo, B., Benedetti, E., Di Loreto, S., Cristiano, L., Laurenti, G., Ceru, M. P., and Cimini, A. (2011). Signal transduction pathways involved in PPARbeta/delta-induced neuronal differentiation. J Cell Physiol 226, 2170-2180.


Dahl, T., Ranheim, T., Holm, S., Berge, R., Aukrust, P., and Halvorsen, B. (2011). Nicotinamide phosphoribosyltransferase and lipid accumulation in macrophages. Eur J Clin Invest.


De Ceulaer, K., Delesalle, C., Van Elzen, R., Van Brantegem, L., Weyns, A., and Van Ginneken, C. (2011). Morphological data indicate a stress response at the oral border of strangulated small intestine in horses. Res Vet Sci.


De Ceulaer, K., Delesalle, C., Van Elzen, R., Van Brantegem, L., Weyns, A., and Van Ginneken, C. (2011). Morphological changes in the small intestinal smooth muscle layers of horses suffering from small intestinal strangulation. Is there a basis for predisposition for reduced contractility? Equine Vet J 43, 439-445.


Del Casale, A., Flanagan, P. V., Larkin, M. J., Allen, C. C., and Kulakov, L. A. (2011). Analysis of transduction in wastewater bacterial populations by targeting the phage-derived 16S rRNA gene sequences. FEMS Microbiol Ecol 76, 100-108.


Ennen, S., Kloss, S., Scheiner-Bobis, G., Failing, K., and Wehrend, A. (2011). Histological, hormonal and biomolecular analysis of the pathogenesis of ovine Prolapsus vaginae ante partum. Theriogenology 75, 212-219.


Feshani, A. M., Kouhsari, S. M., and Mohammadi, S. (2011). Vaccinium arctostaphylos, a common herbal medicine in Iran: molecular and biochemical study of its antidiabetic effects on alloxan-diabetic Wistar rats. J Ethnopharmacol 133, 67-74.


Fu, G. Q., Xu, S., Xie, Y. J., Han, B., Nie, L., Shen, W. B., and Wang, R. (2011). Molecular cloning, characterization, and expression of an alfalfa (Medicago sativa L.) heme oxygenase-1 gene, MsHO1, which is pro-oxidants-regulated. Plant Physiol Biochem 49, 792-799.


Gerou-Ferriani, M., McBrearty, A. R., Burchmore, R. J., Jayawardena, K. G., Eckersall, P. D., and Morris, J. S. (2011). Agarose gel serum protein electrophoresis in cats with and without lymphoma and preliminary results of tandem mass fingerprinting analysis. Vet Clin Pathol 40, 159-173.


Guo, J., Bei, W., Hu, Y., Tang, C., He, W., Liu, X., Huang, L., Cao, Y., Hu, X., Zhong, X., and Cao, L. (2011). A new TCM formula FTZ lowers serum cholesterol by regulating HMG-CoA reductase and CYP7A1 in hyperlipidemic rats. J Ethnopharmacol 135, 299-307.


Hafeez, B. B., Zhong, W., Weichert, J., Dreckschmidt, N. E., Jamal, M. S., and Verma, A. K. (2011). Genetic ablation of PKC epsilon inhibits prostate cancer development and metastasis in transgenic mouse model of prostate adenocarcinoma. Cancer Res 71, 2318-2327.


Hao, Y., Kong, X., Ruan, Y., Gan, H., Chen, H., Zhang, C., Ren, S., and Gu, J. (2011). CDK11p46 and RPS8 associate with each other and suppress translation in a synergistic manner. Biochem Biophys Res Commun 407, 169-174.


Haupt, C., Bereza, M., Kumar, S. T., Kieninger, B., Morgado, I., Hortschansky, P., Fritz, G., Rocken, C., Horn, U., and Fandrich, M. (2011). Pattern recognition with a fibril-specific antibody fragment reveals the surface variability of natural amyloid fibrils. J Mol Biol 408, 529-540.


Henderson, A., Erales, J., Hoyt, M. A., and Coffino, P. (2011). Dependence of proteasome processing rate on substrate unfolding. J Biol Chem 286, 17495-17502.


Henderson, A., and Hershey, J. W. (2011). Eukaryotic translation initiation factor (eIF) 5A stimulates protein synthesis in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 108, 6415-6419.


Huang, H. L., Cheng, Y. S., Huang, C. W., Huang, M. C., and Hsu, W. H. (2011). A novel genetic marker of the ovomucoid gene associated with hatchability in Tsaiya ducks (Anas platyrhynchos). Anim Genet 42, 421-427.


Huang, J., Han, B., Xu, S., Zhou, M., and Shen, W. (2011). Heme oxygenase-1 is involved in the cytokinin-induced alleviation of senescence in detached wheat leaves during dark incubation. J Plant Physiol 168, 768-775.


Huang, J., Matavelli, L. C., and Siragy, H. M. (2011). Renal (pro)renin receptor contributes to development of diabetic kidney disease through transforming growth factor-beta1-connective tissue growth factor signalling cascade. Clin Exp Pharmacol Physiol 38, 215-221.


Kim, S. G., Shin, S. Y., Park, Y. C., Shin, C. S., and Seo, J. H. (2011). Production and solid-phase refolding of human glucagon-like peptide-1 using recombinant Escherichia coli. Protein Expr Purif 78, 197-203.


Koltes, D. A., and Spurlock, D. M. (2011). Coordination of lipid droplet-associated proteins during the transition period of Holstein dairy cows. J Dairy Sci 94, 1839-1848.


Kondratova, V. N., Botezatu, I. V., Shelepov, V. P., and Lichtenstein, A. V. (2011). Tube gel isotachophoresis: a method for quantitative isolation of nucleic acids from diluted solutions. Anal Biochem 408, 304-308.


Lee, H. C., Yang, C. W., Chen, C. Y., and Au, L. C. (2011). Single point mutation of microRNA may cause butterfly effect on alteration of global gene expression. Biochem Biophys Res Commun 404, 1065-1069.


Li, L., Shan, Y., Yang, H., Zhang, S., Lin, M., Zhu, P., Chen, X. Y., Yi, J., McNutt, M. A., Shao, G. Z., and Zhou, R. L. (2011). Upregulation of LAPTM4B-35 Promotes Malignant Transformation and Tumorigenesis in L02 Human Liver Cell Line. Anat Rec (Hoboken) 294, 1135-1142.


Liang, J., Zheng, X., Chen, J., Li, Y., Xing, X., and Bai, Y. (2011). Roles of BDNF, dopamine D(3) receptors, and their interactions in the expression of morphine-induced context-specific locomotor sensitization. Eur Neuropsychopharmacol.


Loukili, N., Rosenblatt-Velin, N., Li, J., Clerc, S., Pacher, P., Feihl, F., Waeber, B., and Liaudet, L. (2011). Peroxynitrite induces HMGB1 release by cardiac cells in vitro and HMGB1 upregulation in the infarcted myocardium in vivo. Cardiovasc Res 89, 586-594.


Lv, X. F., Xu, Y., Han, J. S., and Cui, C. L. (2011). Expression of activity-regulated cytoskeleton-associated protein (Arc/Arg3.1) in the nucleus accumbens is critical for the acquisition, expression and reinstatement of morphine-induced conditioned place preference. Behav Brain Res 223, 182-191.


Mahmoud, W., Rousserie, G., Reveil, B., Tabary, T., Millot, J. M., Artemyev, M., Oleinikov, V. A., Cohen, J. H., Nabiev, I., and Sukhanova, A. (2011). Advanced procedures for labeling of antibodies with quantum dots. Anal Biochem 416, 180-185.


Morecroft, I., Doyle, B., Nilsen, M., Kolch, W., Mair, K., and Maclean, M. R. (2011). Mice lacking the Raf-1 kinase inhibitor protein exhibit exaggerated hypoxia-induced pulmonary hypertension. Br J Pharmacol 163, 948-963.


Park, C. H., Chung, N. O., and Lee, J. (2011). Monodisperse red blood cell-like particles via consolidation of charged droplets. J Colloid Interface Sci 361, 423-428.


Penton, D., Perez-Barzaga, V., Diaz, I., Reytor, M. L., Campos, J., Fando, R., Calvo, L., Cilli, E. M., Morera, V., Castellanos-Serra, L. R., et al. (2011). Validation of a mutant of the pore-forming toxin sticholysin-I for the construction of proteinase-activated immunotoxins. Protein Eng Des Sel 24, 485-493.


Perez, M. F., Ford, K. A., Goussakov, I., Stutzmann, G. E., and Hu, X. T. (2011). Repeated cocaine exposure decreases dopamine D-like receptor modulation of Ca(2+) homeostasis in rat nucleus accumbens neurons. Synapse 65, 168-180.


Proto, M. C., Gazzerro, P., Di Croce, L., Santoro, A., Malfitano, A. M., Pisanti, S., Laezza, C., and Bifulco, M. (2011). Interaction of endocannabinoid system and steroid hormones in the control of colon cancer cell growth. J Cell Physiol.


Reimers, J. M., Milovanovic, M., and Wolf, M. E. (2011). Quantitative analysis of AMPA receptor subunit composition in addiction-related brain regions. Brain Res 1367, 223-233.


Roscioni, S. S., Dekkers, B. G., Prins, A. G., Menzen, M. H., Meurs, H., Schmidt, M., and Maarsingh, H. (2011). cAMP inhibits modulation of airway smooth muscle phenotype via the exchange protein activated by cAMP (Epac) and protein kinase A. Br J Pharmacol 162, 193-209.


Roscioni, S. S., Prins, A. G., Elzinga, C. R., Menzen, M. H., Dekkers, B. G., Halayko, A. J., Meurs, H., Maarsingh, H., and Schmidt, M. (2011). Functional roles of Epac and PKA in human airway smooth muscle phenotype plasticity. Br J Pharmacol.


Sand, J. M., Hafeez, B. B., Aziz, M. H., Siebers, E. M., Dreckschmidt, N. E., and Verma, A. K. (2011). Ultraviolet radiation and 12-O-tetradecanoylphorbol-13-acetate-induced interaction of mouse epidermal protein kinase C epsilon with Stat3 involve integration with Erk1/2. Mol Carcinog.


Song, P., Groos, S., Riederer, B., Feng, Z., Krabbenhoft, A., Manns, M. P., Smolka, A., Hagen, S. J., Neusch, C., and Seidler, U. (2011). Kir4.1 channel expression is essential for parietal cell control of acid secretion. J Biol Chem 286, 14120-14128.


Strosznajder, J. B., Cieslik, M., Cakala, M., Jesko, H., Eckert, A., and Strosznajder, R. P. (2011). Lipoxygenases and poly(ADP-ribose) polymerase in amyloid beta cytotoxicity. Neurochem Res 36, 839-848.


Su, B., Wong, C., Hong, Y., and Chen, S. (2011). Growth factor signaling enhances aromatase activity of breast cancer cells via post-transcriptional mechanisms. J Steroid Biochem Mol Biol 123, 101-108.


Suarez, R., Miro, M., Cerda, V., Perdomo, J. A., and Galmes, J. (2011). Automated flow-based anion-exchange method for high-throughput isolation and real-time monitoring of RuBisCO in plant extracts. Talanta 84, 1259-1266.


Suo, Y., Hardy, S. J., and Randall, L. L. (2011). Orientation of SecA and SecB in complex, derived from disulfide cross-linking. J Bacteriol 193, 190-196.


Tat, S. K., Pelletier, J. P., Mineau, F., Caron, J., and Martel-Pelletier, J. (2011). Strontium ranelate inhibits key factors affecting bone remodeling in human osteoarthritic subchondral bone osteoblasts. Bone 49, 559-567.


Ulge, U. Y., Baker, D. A., and Monnat, R. J., Jr. (2011). Comprehensive computational design of mCreI homing endonuclease cleavage specificity for genome engineering. Nucleic Acids Res 39, 4330-4339.


Uskokovic, A., Dinic, S., Mihailovic, M., Grdovic, N., Arambasic, J., Vidakovic, M., Bogojevic, D., Ivanovic-Matic, S., Martinovic, V., Petrovic, M., et al. (2011). STAT3/NF-kappaB interactions determine the level of haptoglobin expression in male rats exposed to dietary restriction and/or acute phase stimuli. Mol Biol Rep.


Vorackova, I., Suchanova, S., Ulbrich, P., Diehl, W. E., and Ruml, T. (2011). Purification of proteins containing zinc finger domains using immobilized metal ion affinity chromatography. Protein Expr Purif 79, 88-95.


Wang, G. B., Wu, L. Z., Yu, P., Li, Y. J., Ping, X. J., and Cui, C. L. (2011). Multiple 100 Hz electroacupuncture treatments produced cumulative effect on the suppression of morphine withdrawal syndrome: Central preprodynorphin mRNA and p-CREB implicated. Peptides 32, 713-721.


Wang, H., Lai, Y. J., Chan, Y. L., Li, T. L., and Wu, C. J. (2011). Epigallocatechin-3-gallate effectively attenuates skeletal muscle atrophy caused by cancer cachexia. Cancer Lett 305, 40-49.


White, K., Dempsie, Y., Nilsen, M., Wright, A. F., Loughlin, L., and MacLean, M. R. (2011). The serotonin transporter, gender, and 17beta oestradiol in the development of pulmonary arterial hypertension. Cardiovasc Res 90, 373-382.


Yuan, X., and Liu, N. (2011). Pioglitazone suppresses advanced glycation end product-induced expression of plasminogen activator inhibitor-1 in vascular smooth muscle cells. J Genet Genomics 38, 193-200.


Zhang, G., Jing, X., Wang, X., Shi, W., Sun, P., Su, C., Zhu, M., Yang, Z., Yao, Z., and Yang, J. (2011). Contribution of the proinflammatory cytokine IL-18 in the formation of human nasal polyps. Anat Rec (Hoboken) 294, 953-960.


Zhong, J. L., Yang, L., Lu, F., Xiao, H., Xu, R., Wang, L., Zhu, F., and Zhang, Y. (2011). UVA, UVB and UVC induce differential response signaling pathways converged on the eIF2alpha phosphorylation. Photochem Photobiol.

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We recently published a paper in proteomics using the 1D module of the TotalLab software. They have developed a very easy to use system and multiple people in our lab use it. The results are great and we really enjoy using it.
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